update and fix scripts, add final MC steps

analysis/tasks/do_collect_iter_results.py

+'''
+Collect the outputs of interest at the end of the MC iteration
+'''
+
+
+from doit.tools import create_folder
+from doit.action import CmdAction
+import yaml
+import pathlib
+from itertools import product, chain
+
+the_mapping = yaml.load(open('etc/mapping.yaml'),
+                        Loader=yaml.Loader)
+detectors = the_mapping['detectors']
+FC_detectors = list(filter(lambda x:x.startswith('U'), detectors))
+Ge_detectors = list(filter(lambda x: not x.startswith('U'), detectors))
+
+the_transitions = yaml.load(open('etc/transitions_to_look_at.yaml'),
+                        Loader=yaml.Loader)
+
+
+
+# EOF